Publications

Publications

Insights into bidirectional gene expression control using the canonical GAL1/GAL10 promoter 

Gregory L. Elison, Yuan Xue, Ruijie Song, and Murat Acar
Cell Reports  25, 737-748 (2018)

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The systems biology of single-cell aging 

Ruijie Song, Ethan A. Sarnoski, and Murat Acar
iScience  7, 154-169 (2018)

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Fundamental characteristics of single-cell aging in diploid yeast 

Ethan A. Sarnoski, Ruijie Song, Ege Ertekin, Noelle Koonce, and Murat Acar
iScience  7, 96-109 (2018)

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Multi-component gene network design as a survival strategy in diverse environments 

Xinyue Luo, Ruijie Song, and Murat Acar
BMC Systems Biology 12:85 (2018)

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Live-cell imaging of chromatin condensation dynamics by CRISPR 

Yuan Xue and Murat Acar
iScience 4, 216-235 (2018)

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Scarless genome editing: progress towards understanding genotype-phenotype relationships 

Gregory L. Elison and Murat Acar
Current Genetics (2018)  doi.org/10.1007/s00294-018-0850-8

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Mechanisms for the epigenetic inheritance of stress response in single cells 

Yuan Xue and Murat Acar
Current Genetics (2018)  doi.org/10.1007/s00294-018-0849-1

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Heritable stress response dynamics revealed by single-cell genealogy 

Meenakshi Chatterjee and Murat Acar
Science Advances 4, e1701775 (2018)

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The generational scalability of single-cell replicative aging 

Ping Liu and Murat Acar
Science Advances 4, eaao4666 (2018)

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A high-throughput screen for yeast replicative lifespan identifies lifespan-extending compounds

Ethan A. Sarnoski, Ping Liu, and Murat Acar
Cell Reports 21, 2639-2646 (2017)

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Noise reduction as an emergent property of single-cell aging

Ping Liu, Ruijie Song, Gregory L. Elison, Weilin Peng, and Murat Acar
Nature Communications 8:680 (2017)

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A precise genome editing method reveals insights into the activity of eukaryotic promoters

Gregory L. Elison, Ruijie Song, and Murat Acar
Cell Reports 18, 275-286 (2017)

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Noise reduction facilitated by dosage compensation in gene networks

Weilin Peng, Ruijie Song, and Murat Acar
Nature Communications 7:12959 (2016)

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A cell size- and cell cycle-aware stochastic model for predicting time-dynamic gene network activity in individual cells

Ruijie Song, Weilin Peng, Ping Liu, and Murat Acar
BMC Systems Biology 9:91 (2015)

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Yeast replicator: a high-throughput multiplexed microfluidics platform for automated measurements of single-cell aging

Ping Liu, Thomas Z. Young, and Murat Acar
Cell Reports 13:634-644 (2015)

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Evolution of gene network activity by tuning the strength of negative-feedback regulation

Weilin Peng, Ping Liu, Yuan Xue, and Murat Acar
Nature Communications 6:6226 (2015)

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Network-dosage compensation topologies as recurrent network motifs in natural gene networks

Ruijie Song, Ping Liu, and Murat Acar
BMC Systems Biology 8:69 (2014)

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A general mechanism for network-dosage compensation in gene circuits

Murat Acar, Bernardo F. Pando, Frances H. Arnold, Michael B. Elowitz, and Alexander van Oudenaarden
Science 329, 1656-1660 (2010)

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Stochastic switching as a survival strategy in fluctuating environments

Murat Acar, Jerome T. Mettetal, and Alexander van Oudenaarden
Nature Genetics 40, 471-475 (2008)

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Enhancement of cellular memory by reducing stochastic transitions

Murat Acar, Attila Becskei, and Alexander van Oudenaarden
Nature 435, 228-232 (2005)

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Photodissociation spectroscopy of Al+ -acetaldehyde

Wenyun Lu, Murat Acar, and Paul D. Kleiber
Journal of Chemical Physics 116, 4847-4852 (2002)

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